Biblio

S. A. Boyle, Yarwood, R. R., Bottomley, P. J., and Myrold, D. D., “Bacterial and fungal contributions to soil nitrogen cycling under Douglas fir and red alder at two sites in Oregon”, Soil Biology and Biochemistry, vol. 40, no. 2, pp. 443 - 451, 2008.

S. A. Boyle-Yarwood, Bottomley, P. J., and Myrold, D. D., “Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon”, Environmental Microbiology, vol. 107, no. 11, pp. 2956 - 2965, 2008.

D. D. Myrold and Bottomley, P. J., “Nitrogen mineralization and immobilization”, in Nitrogen in Agricultural Soils, Madison, WI: American Society of Agronomy, 2008, pp. 157-172.

P. J. Bottomley and Myrold, D. D., “Biological nitrogen fixation: The return of N to the soil”, in Soil Microbiology, Ecology, and Biochemistry, 3rdrd ed., Burlington, MA: Academic Press, 2007, pp. 365-387.

D. D. Myrold, Bottomley, P. J., Högberg, M. N., Högberg, P., and Sulzman, E. W., “Linking microbial communities to activity in soil with molecular and stable isotope techniques”, in Linking Management to Global Climate Challenges: The Proceedings of the International Symposium on Forest Soils and Ecosystem Health, Griffith University, Brisbane, Australia, 2007.

J. B. Cliff, Bottomley, P. J., Gaspar, D. J., and Myrold, D. D., “Nitrogen mineralization and assimilation at millimeter scales”, Soil Biology and Biochemistry, vol. 39, no. 3, pp. 823 - 826, 2007.

M. L. Rockhold, Yarwood, R. R., Niemet, M. R., Bottomley, P. J., Brockman, F. J., and Selker, J., “Visualization and modeling of the colonization dynamics of a bioluminescent bacterium in variably saturated, translucent quartz sand”, Advances in water resources, vol. 30, pp. 1593–1607, 2007.

M. A. Williams, Myrold, D. D., and Bottomley, P. J., “Carbon flow from 13C-labeled straw and root residues into the phospholipid fatty acids of a soil microbial community under field conditions”, Soil Biology and Biochemistry, vol. 38, no. 4, pp. 759 - 768, 2006.

M. A. Williams, Myrold, D. D., and Bottomley, P. J., “Distribution and fate of 13C-labeled root and straw residues from ryegrass and crimson clover in soil under western Oregon field conditions”, Biology and Fertility of Soils, vol. 42, no. 6, pp. 523 - 531, 2006.

R. R. Yarwood, Rockhold, M. L., Niemet, M. R., Selker, J., and Bottomley, P. J., “Impact of microbial growth on water flow and solute transport in unsaturated porous media”, Water resources research, vol. 42, 2006.

S. BOYLE, RICH, J., Bottomley, P. J., CROMACKJR, K., and Myrold, D. D., “Reciprocal transfer effects on denitrifying community composition and activity at forest and meadow sites in the Cascade Mountains of Oregon”, Soil Biology and Biochemistry, vol. 38, no. 5, pp. 870 - 878, 2006.

P. J. Bottomley, Yarwood, R. R., Kageyama, S. A., Waterstripe, K. E., Williams, M. A., Cromack, K., and Myrold, D. D., “Responses of soil bacterial and fungal communities to reciprocal transfers of soil between adjacent coniferous forest and meadow vegetation in the Cascade Mountains of Oregon”, Plant and Soil, vol. 28, no. 1-2, pp. 35 - 45, 2006.

M. L. Rockhold, Yarwood, R. R., Niemet, M. R., Bottomley, P. J., and Selker, J., “Experimental observations and numerical modeling of coupled microbial and transport processes in variably saturated sand”, Vadose Zone Journal, vol. 4, pp. 407–417, 2005.

H. B. Runes, Jenkins, J. J., Moore, J. A., Bottomley, P. J., and Wilson, B. D., “Treatment of atrazine in nursery irrigation runoff by a constructed wetland.”, Water Res, vol. 37, no. 3, pp. 539-50, 2003.

M. L. Rockhold, Yarwood, R. R., Niemet, M. R., Bottomley, P. J., and Selker, J., “Considerations for modeling bacterial-induced changes in hydraulic properties of variably saturated porous media”, Advances in water resources, vol. 25, pp. 477–495, 2002.

R. R. Yarwood, Rockhold, M. L., Niemet, M. R., Selker, J., and Bottomley, P. J., “Noninvasive quantitative measurement of bacterial growth in porous media under unsaturated-flow conditions”, Applied and environmental microbiology, vol. 68, pp. 3597–3605, 2002.

H. B. Runes, Jenkins, J. J., and Bottomley, P. J., “Atrazine degradation by bioaugmented sediment from constructed wetlands.”, Appl Microbiol Biotechnol, vol. 57, no. 3, pp. 427-32, 2001.

H. B. Runes, Bottomley, P. J., Lerch, R. N., and Jenkins, J. J., “Atrazine remediation in wetland microcosms.”, Environ Toxicol Chem, vol. 20, no. 5, pp. 1059-66, 2001.

S. L. Uesugi, Yarwood, R. R., Selker, J., and Bottomley, P. J., “A model that uses the induction phase of lux gene-dependent bioluminescence in Pseudomonas fluorescens HK44 to quantify cell density in translucent porous media”, Journal of microbiological methods, vol. 47, pp. 315–322, 2001.