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A
R. S. Rasmusse Hellberg
and
Morrissey, M. T.
,
“
Advances in DNA-based techniques for the detection of seafood species substitution on the commercial market.
”
,
J Lab Autom
, vol. 16, no. 4, pp. 308-21, 2011.
E. F. O'Donnell
,
Saili, K. S.
,
Koch, D. C.
,
Kopparapu, P. R.
,
Farrer, D.
,
Bisson, W. H.
,
Mathew, L. K.
,
Sengupta, S.
,
Kerkvliet, N. I.
,
Tanguay, R. L.
, and
Kolluri, S. Kumar
,
“
The anti-inflammatory drug leflunomide is an agonist of the aryl hydrocarbon receptor.
”
,
PLoS One
, vol. 5, no. 10, 2010.
E. A. Andreasen
,
Mathew, L. K.
,
Löhr, C. V.
,
Hasson, R.
, and
Tanguay, R. L.
,
“
Aryl hydrocarbon receptor activation impairs extracellular matrix remodeling during zebra fish fin regeneration.
”
,
Toxicol Sci
, vol. 95, no. 1, pp. 215-26, 2007.
C
H. - J. Kim
,
Park, S. - H.
, and
Kim, H. - Y.
,
“
Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR.
”
,
Appl Environ Microbiol
, vol. 72, no. 9, pp. 6142-51, 2006.
E
S. Hong Park
,
Dowd, S. E.
,
McReynolds, J. L.
,
Byrd, J. A.
,
Nisbet, D. J.
, and
Ricke, S. C.
,
“
Evaluation of feed grade sodium bisulfate impact on gastrointestinal tract microbiota ecology in broilers via a pyrosequencing platform.
”
,
Poult Sci
, vol. 94, no. 12, pp. 3040-7, 2015.
F. Tilton
and
Tanguay, R. L.
,
“
Exposure to sodium metam during zebrafish somitogenesis results in early transcriptional indicators of the ensuing neuronal and muscular dysfunction.
”
,
Toxicol Sci
, vol. 106, no. 1, pp. 103-12, 2008.
F
P. Piantoni
,
Bionaz, M.
,
Graugnard, D. E.
,
Daniels, K. M.
,
Everts, R. E.
,
Rodriguez-Zas, S. L.
,
Lewin, H. A.
,
Hurley, H. L.
,
Akers, M.
, and
Loor, J. J.
,
“
Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.
”
,
BMC Genomics
, vol. 11, p. 331, 2010.
G
P. Piantoni
,
Bionaz, M.
,
Graugnard, D. E.
,
Daniels, K. M.
,
Akers, M.
, and
Loor, J. J.
,
“
Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.
”
,
J Nutr
, vol. 138, no. 6, pp. 1158-64, 2008.
K. M. Moyes
,
Drackley, J. K.
,
Morin, D. E.
,
Bionaz, M.
,
Rodriguez-Zas, S. L.
,
Everts, R. E.
,
Lewin, H. A.
, and
Loor, J. J.
,
“
Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling..
”
,
BMC Genomics
, vol. 10, p. 542, 2009.
C. D. Curtin
,
Bellon, J. R.
,
Henschke, P. A.
,
Godden, P. W.
, and
Lopes, M. A. de Barro
,
“
Genetic diversity of Dekkera bruxellensis yeasts isolated from Australian wineries.
”
,
FEMS Yeast Res
, vol. 7, no. 3, pp. 471-81, 2007.
H
S. K. Krueger
,
Siddens, L. K.
,
Henderson, M. C.
,
Andreasen, E. A.
,
Tanguay, R. L.
,
Pereira, C. B.
,
Cabacungan, E. T.
,
Hines, R. N.
,
Ardlie, K. G.
, and
Williams, D. E.
,
“
Haplotype and functional analysis of four flavin-containing monooxygenase isoform 2 (FMO2) polymorphisms in Hispanics.
”
,
Pharmacogenet Genomics
, vol. 15, no. 4, pp. 245-56, 2005.
S. Zara
,
G Farris, A.
,
Budroni, M.
, and
Bakalinsky, A. T.
,
“
HSP12 is essential for biofilm formation by a Sardinian wine strain of S. cerevisiae.
”
,
Yeast
, vol. 19, no. 3, pp. 269-76, 2002.
Y. Li
,
Ross-Viola, J. S.
,
Shay, N. F.
,
Moore, D. D.
, and
Ricketts, M. - L.
,
“
Human CYP3A4 and murine Cyp3A11 are regulated by equol and genistein via the pregnane X receptor in a species-specific manner.
”
,
J Nutr
, vol. 139, no. 5, pp. 898-904, 2009.
I
A. K. G. Kadegowda
,
Bionaz, M.
,
Thering, B.
,
Piperova, L. S.
,
Erdman, R. A.
, and
Loor, J. J.
,
“
Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements.
”
,
J Dairy Sci
, vol. 92, no. 5, pp. 2007-19, 2009.
G. P. Pfeifer
,
Tanguay, R. L.
,
Steigerwald, S. D.
, and
Riggs, A. D.
,
“
In vivo footprint and methylation analysis by PCR-aided genomic sequencing: comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.
”
,
Genes Dev
, vol. 4, no. 8, pp. 1277-87, 1990.
R. S. Rasmusse Hellberg
,
Naaum, A. M.
,
Handy, S. M.
,
Hanner, R. H.
,
Deeds, J. R.
,
Yancy, H. F.
, and
Morrissey, M. T.
,
“
Interlaboratory evaluation of a real-time multiplex polymerase chain reaction method for identification of salmon and trout species in commercial products.
”
,
J Agric Food Chem
, vol. 59, no. 3, pp. 876-84, 2011.
S. Tramontana
,
Bionaz, M.
,
Sharma, A.
,
Graugnard, D. E.
,
Cutler, E. A.
,
Ajmone-Marsan, P.
,
Hurley, W. L.
, and
Loor, J. J.
,
“
Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.
”
,
J Dairy Sci
, vol. 91, no. 8, pp. 3057-66, 2008.
M
S. Hong Park
,
Hanning, I.
,
Jarquin, R.
,
Moore, P.
,
Donoghue, D. J.
,
Donoghue, A. M.
, and
Ricke, S. C.
,
“
Multiplex PCR assay for the detection and quantification of Campylobacter spp., Escherichia coli O157:H7, and Salmonella serotypes in water samples.
”
,
FEMS Microbiol Lett
, vol. 316, no. 1, pp. 7-15, 2011.
R. S. Rasmusse Hellberg
,
Morrissey, M. T.
, and
Hanner, R. H.
,
“
A multiplex PCR method for the identification of commercially important salmon and trout species (Oncorhynchus and Salmo) in North America.
”
,
J Food Sci
, vol. 75, no. 7, pp. C595-606, 2010.
N
J. J. Loor
,
Everts, R. E.
,
Bionaz, M.
,
Dann, H. M.
,
Morin, D. E.
,
Oliveira, R.
,
Rodriguez-Zas, S. L.
,
Drackley, J. K.
, and
Lewin, H. A.
,
“
Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.
”
,
Physiol Genomics
, vol. 32, no. 1, pp. 105-16, 2007.
P
R. L. Tanguay
,
Pfeifer, G. P.
, and
Riggs, A. D.
,
“
PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized cells.
”
,
Nucleic Acids Res
, vol. 18, no. 19, p. 5902, 1990.
Q
J. Singer-Sam
,
LeBon, J. M.
,
Tanguay, R. L.
, and
Riggs, A. D.
,
“
A quantitative HpaII-PCR assay to measure methylation of DNA from a small number of cells.
”
,
Nucleic Acids Res
, vol. 18, no. 3, p. 687, 1990.
S
S. - H. Park
,
Kim, H. - J.
,
Kim, J. - H.
,
Kim, T. - W.
, and
Kim, H. - Y.
,
“
Simultaneous detection and identification of Bacillus cereus group bacteria using multiplex PCR.
”
,
J Microbiol Biotechnol
, vol. 17, no. 7, pp. 1177-82, 2007.