College of Agricultural Sciences

R. S. Rasmusse Hellberg and Morrissey, M. T., “Advances in DNA-based techniques for the detection of seafood species substitution on the commercial market.”, J Lab Autom, vol. 16, no. 4, pp. 308-21, 2011.

E. F. O'Donnell, Saili, K. S., Koch, D. C., Kopparapu, P. R., Farrer, D., Bisson, W. H., Mathew, L. K., Sengupta, S., Kerkvliet, N. I., Tanguay, R. L., and Kolluri, S. Kumar, “The anti-inflammatory drug leflunomide is an agonist of the aryl hydrocarbon receptor.”, PLoS One, vol. 5, no. 10, 2010.

E. A. Andreasen, Mathew, L. K., Löhr, C. V., Hasson, R., and Tanguay, R. L., “Aryl hydrocarbon receptor activation impairs extracellular matrix remodeling during zebra fish fin regeneration.”, Toxicol Sci, vol. 95, no. 1, pp. 215-26, 2007.

H. - J. Kim, Park, S. - H., and Kim, H. - Y., “Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR.”, Appl Environ Microbiol, vol. 72, no. 9, pp. 6142-51, 2006.

S. Hong Park, Dowd, S. E., McReynolds, J. L., Byrd, J. A., Nisbet, D. J., and Ricke, S. C., “Evaluation of feed grade sodium bisulfate impact on gastrointestinal tract microbiota ecology in broilers via a pyrosequencing platform.”, Poult Sci, vol. 94, no. 12, pp. 3040-7, 2015.

F. Tilton and Tanguay, R. L., “Exposure to sodium metam during zebrafish somitogenesis results in early transcriptional indicators of the ensuing neuronal and muscular dysfunction.”, Toxicol Sci, vol. 106, no. 1, pp. 103-12, 2008.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., “Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.”, BMC Genomics, vol. 11, p. 331, 2010.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Akers, M., and Loor, J. J., “Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.”, J Nutr, vol. 138, no. 6, pp. 1158-64, 2008.

K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., “Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling..”, BMC Genomics, vol. 10, p. 542, 2009.

C. D. Curtin, Bellon, J. R., Henschke, P. A., Godden, P. W., and Lopes, M. A. de Barro, “Genetic diversity of Dekkera bruxellensis yeasts isolated from Australian wineries.”, FEMS Yeast Res, vol. 7, no. 3, pp. 471-81, 2007.

S. K. Krueger, Siddens, L. K., Henderson, M. C., Andreasen, E. A., Tanguay, R. L., Pereira, C. B., Cabacungan, E. T., Hines, R. N., Ardlie, K. G., and Williams, D. E., “Haplotype and functional analysis of four flavin-containing monooxygenase isoform 2 (FMO2) polymorphisms in Hispanics.”, Pharmacogenet Genomics, vol. 15, no. 4, pp. 245-56, 2005.

S. Zara, G Farris, A., Budroni, M., and Bakalinsky, A. T., “HSP12 is essential for biofilm formation by a Sardinian wine strain of S. cerevisiae.”, Yeast, vol. 19, no. 3, pp. 269-76, 2002.

Y. Li, Ross-Viola, J. S., Shay, N. F., Moore, D. D., and Ricketts, M. - L., “Human CYP3A4 and murine Cyp3A11 are regulated by equol and genistein via the pregnane X receptor in a species-specific manner.”, J Nutr, vol. 139, no. 5, pp. 898-904, 2009.

A. K. G. Kadegowda, Bionaz, M., Thering, B., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements.”, J Dairy Sci, vol. 92, no. 5, pp. 2007-19, 2009.

G. P. Pfeifer, Tanguay, R. L., Steigerwald, S. D., and Riggs, A. D., “In vivo footprint and methylation analysis by PCR-aided genomic sequencing: comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.”, Genes Dev, vol. 4, no. 8, pp. 1277-87, 1990.

R. S. Rasmusse Hellberg, Naaum, A. M., Handy, S. M., Hanner, R. H., Deeds, J. R., Yancy, H. F., and Morrissey, M. T., “Interlaboratory evaluation of a real-time multiplex polymerase chain reaction method for identification of salmon and trout species in commercial products.”, J Agric Food Chem, vol. 59, no. 3, pp. 876-84, 2011.

S. Tramontana, Bionaz, M., Sharma, A., Graugnard, D. E., Cutler, E. A., Ajmone-Marsan, P., Hurley, W. L., and Loor, J. J., “Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.”, J Dairy Sci, vol. 91, no. 8, pp. 3057-66, 2008.

S. Hong Park, Hanning, I., Jarquin, R., Moore, P., Donoghue, D. J., Donoghue, A. M., and Ricke, S. C., “Multiplex PCR assay for the detection and quantification of Campylobacter spp., Escherichia coli O157:H7, and Salmonella serotypes in water samples.”, FEMS Microbiol Lett, vol. 316, no. 1, pp. 7-15, 2011.

R. S. Rasmusse Hellberg, Morrissey, M. T., and Hanner, R. H., “A multiplex PCR method for the identification of commercially important salmon and trout species (Oncorhynchus and Salmo) in North America.”, J Food Sci, vol. 75, no. 7, pp. C595-606, 2010.

J. J. Loor, Everts, R. E., Bionaz, M., Dann, H. M., Morin, D. E., Oliveira, R., Rodriguez-Zas, S. L., Drackley, J. K., and Lewin, H. A., “Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.”, Physiol Genomics, vol. 32, no. 1, pp. 105-16, 2007.

R. L. Tanguay, Pfeifer, G. P., and Riggs, A. D., “PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized cells.”, Nucleic Acids Res, vol. 18, no. 19, p. 5902, 1990.

J. Singer-Sam, LeBon, J. M., Tanguay, R. L., and Riggs, A. D., “A quantitative HpaII-PCR assay to measure methylation of DNA from a small number of cells.”, Nucleic Acids Res, vol. 18, no. 3, p. 687, 1990.

S. - H. Park, Kim, H. - J., Kim, J. - H., Kim, T. - W., and Kim, H. - Y., “Simultaneous detection and identification of Bacillus cereus group bacteria using multiplex PCR.”, J Microbiol Biotechnol, vol. 17, no. 7, pp. 1177-82, 2007.