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Gene Expression Regulation
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A
M. Bionaz
and
Loor, J. J.
,
“
ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 are the most abundant isoforms in bovine mammary tissue and their expression is affected by stage of lactation.
”
,
J Nutr
, vol. 138, no. 6, pp. 1019-24, 2008.
D. E. Graugnard
,
Piantoni, P.
,
Bionaz, M.
,
Berger, L. L.
,
Faulkner, D. B.
, and
Loor, J. J.
,
“
Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus x Simmental cattle fed high-starch or low-starch diets.
”
,
BMC Genomics
, vol. 10, p. 142, 2009.
E. A. Andreasen
,
Mathew, L. K.
,
Löhr, C. V.
,
Hasson, R.
, and
Tanguay, R. L.
,
“
Aryl hydrocarbon receptor activation impairs extracellular matrix remodeling during zebra fish fin regeneration.
”
,
Toxicol Sci
, vol. 95, no. 1, pp. 215-26, 2007.
B
F. Stormshak
,
“
Biochemical and endocrine aspects of oxytocin production by the mammalian corpus luteum.
”
,
Reprod Biol Endocrinol
, vol. 1, p. 92, 2003.
S. C. Tilton
,
Tal, T. L.
,
Scroggins, S. M.
,
Franzosa, J. A.
,
Peterson, E. S.
,
Tanguay, R. L.
, and
Waters, K. M.
,
“
Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.
”
,
BMC Bioinformatics
, vol. 13, p. 311, 2012.
Y. Yamazaki
and
Jaiswal, P.
,
“
Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.
”
,
Plant & cell physiology
, vol. 46, pp. 63-8, 2005.
J. S. Osorio
,
Lohakare, J.
, and
Bionaz, M.
,
“
Biosynthesis of milk fat, protein, and lactose: roles of transcriptional and posttranscriptional regulation.
”
,
Physiol Genomics
, vol. 48, no. 4, pp. 231-56, 2016.
F. Stormshak
and
Bishop, C.
,
“
Board-invited review: Estrogen and progesterone signaling: genomic and nongenomic actions in domestic ruminants.
”
,
J Anim Sci
, vol. 86, no. 2, pp. 299-315, 2008.
C
T. M. Hazzard
,
Christenson, L. K.
, and
Stouffer, R. L.
,
“
Changes in expression of vascular endothelial growth factor and angiopoietin-1 and -2 in the macaque corpus luteum during the menstrual cycle.
”
,
Mol Hum Reprod
, vol. 6, no. 11, pp. 993-8, 2000.
M. Bionaz
,
Baumrucker, C. R.
,
Shirk, E.
,
Heuvel, J. P. Vanden
,
Block, E.
, and
Varga, G. A.
,
“
Characterization of Madin-Darby bovine kidney cell line for peroxisome proliferator-activated receptors: temporal response and sensitivity to fatty acids.
”
,
J Dairy Sci
, vol. 91, no. 7, pp. 2808-13, 2008.
H. Kang
,
Lee, C. Hyung
,
Kim, J. Rhan
,
Kwon, J. Yeon
,
Seo, S. Gwon
,
Han, J. Gab
,
Kim, B. Gon
,
Kim, J. - E.
, and
Lee, K. Won
,
“
Chlorella vulgaris Attenuates Dermatophagoides Farinae-Induced Atopic Dermatitis-Like Symptoms in NC/Nga Mice.
”
,
Int J Mol Sci
, vol. 16, no. 9, pp. 21021-34, 2015.
S. M. Bugel
,
Bonventre, J. A.
,
White, L. A.
,
Tanguay, R. L.
, and
Cooper, K. R.
,
“
Chronic exposure of killifish to a highly polluted environment desensitizes estrogen-responsive reproductive and biomarker genes.
”
,
Aquat Toxicol
, vol. 152, pp. 222-31, 2014.
D
A. C Quandt
,
Di, Y.
,
Elser, J.
,
Jaiswal, P.
, and
Spatafora, J. W.
,
“
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.
”
,
G3 (Bethesda, Md.)
, vol. 6, pp. 731-41, 2016.
E
N. B. Litherland
,
Bionaz, M.
,
Wallace, R. L.
,
Loor, J. J.
, and
Drackley, J. K.
,
“
Effects of the peroxisome proliferator-activated receptor-alpha agonists clofibrate and fish oil on hepatic fatty acid metabolism in weaned dairy calves.
”
,
J Dairy Sci
, vol. 93, no. 6, pp. 2404-18, 2010.
V. V. Peremyslov
,
Mockler, T. C.
,
Filichkin, S. A.
,
Fox, S. E.
,
Jaiswal, P.
,
Makarova, K. S.
,
Koonin, E. V.
, and
Dolja, V. V.
,
“
Expression, splicing, and evolution of the myosin gene family in plants.
”
,
Plant physiology
, vol. 155, pp. 1191-204, 2011.
F
M. Bionaz
,
Thering, B. J.
, and
Loor, J. J.
,
“
Fine metabolic regulation in ruminants via nutrient-gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activation.
”
,
Br J Nutr
, vol. 107, no. 2, pp. 179-91, 2012.
C. Y. Usenko
,
Harper, S. L.
, and
Tanguay, R. L.
,
“
Fullerene C60 exposure elicits an oxidative stress response in embryonic zebrafish.
”
,
Toxicol Appl Pharmacol
, vol. 229, no. 1, pp. 44-55, 2008.
G
P. Piantoni
,
Bionaz, M.
,
Graugnard, D. E.
,
Daniels, K. M.
,
Akers, M.
, and
Loor, J. J.
,
“
Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.
”
,
J Nutr
, vol. 138, no. 6, pp. 1158-64, 2008.
M. Bionaz
and
Loor, J. J.
,
“
Gene networks driving bovine milk fat synthesis during the lactation cycle.
”
,
BMC Genomics
, vol. 9, p. 366, 2008.
H
L. Yee Cheong
,
Suk, S.
,
Thimmegowda, N. R.
,
Chung, M. - Y.
,
Yang, H.
,
Seo, S. Gwon
,
Shwetha, B.
,
Kim, J. - E.
,
Kwon, J. Yeon
,
Kim, B. Yeon
, and
Lee, K. Won
,
“
Hirsutenone Directly Targets PI3K and ERK to Inhibit Adipogenesis in 3T3-L1 Preadipocytes.
”
,
J Cell Biochem
, vol. 116, no. 7, pp. 1361-70, 2015.
Y. Li
,
Ross-Viola, J. S.
,
Shay, N. F.
,
Moore, D. D.
, and
Ricketts, M. - L.
,
“
Human CYP3A4 and murine Cyp3A11 are regulated by equol and genistein via the pregnane X receptor in a species-specific manner.
”
,
J Nutr
, vol. 139, no. 5, pp. 898-904, 2009.
I
S. Tramontana
,
Bionaz, M.
,
Sharma, A.
,
Graugnard, D. E.
,
Cutler, E. A.
,
Ajmone-Marsan, P.
,
Hurley, W. L.
, and
Loor, J. J.
,
“
Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.
”
,
J Dairy Sci
, vol. 91, no. 8, pp. 3057-66, 2008.
J. Azevedo
,
Courtois, F.
,
Hakimi, M. - A.
,
Demarsy, E.
,
Lagrange, T.
,
Alcaraz, J. - P.
,
Jaiswal, P.
,
Maréchal-Drouard, L.
, and
Lerbs-Mache, S.
,
“
Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein.
”
,
Proceedings of the National Academy of Sciences of the United States of America
, vol. 105, pp. 9123-8, 2008.
L
B. J. Thering
,
Bionaz, M.
, and
Loor, J. J.
,
“
Long-chain fatty acid effects on peroxisome proliferator-activated receptor-alpha-regulated genes in Madin-Darby bovine kidney cells: optimization of culture conditions using palmitate.
”
,
J Dairy Sci
, vol. 92, no. 5, pp. 2027-37, 2009.
N
T. L. Tal
and
Tanguay, R. L.
,
“
Non-coding RNAs--novel targets in neurotoxicity.
”
,
Neurotoxicology
, vol. 33, no. 3, pp. 530-44, 2012.
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