College of Agricultural Sciences

L. Cooper, Meier, A., Laporte, M. - A., Elser, J. L., Mungall, C., Sinn, B. T., Cavaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J. H., Stevenson, D. W., Arnaud, E., and Jaiswal, P., “The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.”, Nucleic acids research, vol. 46, pp. D1168-D1180, 2018.

J. S. Osorio, Lohakare, J., and Bionaz, M., “Biosynthesis of milk fat, protein, and lactose: roles of transcriptional and posttranscriptional regulation.”, Physiol Genomics, vol. 48, no. 4, pp. 231-56, 2016.

A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.

H. F. Xu, Luo, J., Zhao, W. S., Yang, Y. C., Tian, H. B., Shi, H. B., and Bionaz, M., “Overexpression of SREBP1 (sterol regulatory element binding protein 1) promotes de novo fatty acid synthesis and triacylglycerol accumulation in goat mammary epithelial cells.”, J Dairy Sci, vol. 99, no. 1, pp. 783-95, 2016.

H. Kang, Lee, C. Hyung, Kim, J. Rhan, Kwon, J. Yeon, Seo, S. Gwon, Han, J. Gab, Kim, B. Gon, Kim, J. - E., and Lee, K. Won, “Chlorella vulgaris Attenuates Dermatophagoides Farinae-Induced Atopic Dermatitis-Like Symptoms in NC/Nga Mice.”, Int J Mol Sci, vol. 16, no. 9, pp. 21021-34, 2015.

L. Yee Cheong, Suk, S., Thimmegowda, N. R., Chung, M. - Y., Yang, H., Seo, S. Gwon, Shwetha, B., Kim, J. - E., Kwon, J. Yeon, Kim, B. Yeon, and Lee, K. Won, “Hirsutenone Directly Targets PI3K and ERK to Inhibit Adipogenesis in 3T3-L1 Preadipocytes.”, J Cell Biochem, vol. 116, no. 7, pp. 1361-70, 2015.

M. Bionaz, Monaco, E., and Wheeler, M. B., “Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks.”, PLoS One, vol. 10, no. 9, p. e0137644, 2015.

M. Bionaz, Osorio, J. S., and Loor, J. J., “TRIENNIAL LACTATION SYMPOSIUM: Nutrigenomics in dairy cows: Nutrients, transcription factors, and techniques.”, J Anim Sci, vol. 93, no. 12, pp. 5531-53, 2015.

S. M. Bugel, Bonventre, J. A., White, L. A., Tanguay, R. L., and Cooper, K. R., “Chronic exposure of killifish to a highly polluted environment desensitizes estrogen-responsive reproductive and biomarker genes.”, Aquat Toxicol, vol. 152, pp. 222-31, 2014.

S. C. Tilton, Tal, T. L., Scroggins, S. M., Franzosa, J. A., Peterson, E. S., Tanguay, R. L., and Waters, K. M., “Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.”, BMC Bioinformatics, vol. 13, p. 311, 2012.

M. Bionaz, Thering, B. J., and Loor, J. J., “Fine metabolic regulation in ruminants via nutrient-gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activation.”, Br J Nutr, vol. 107, no. 2, pp. 179-91, 2012.

T. L. Tal and Tanguay, R. L., “Non-coding RNAs--novel targets in neurotoxicity.”, Neurotoxicology, vol. 33, no. 3, pp. 530-44, 2012.

J. Yeon Kwon, Seo, S. Gwon, Heo, Y. - S., Yue, S., Cheng, J. - X., Lee, K. Won, and Kim, K. - H., “Piceatannol, natural polyphenolic stilbene, inhibits adipogenesis via modulation of mitotic clonal expansion and insulin receptor-dependent insulin signaling in early phase of differentiation.”, J Biol Chem, vol. 287, no. 14, pp. 11566-78, 2012.

V. V. Peremyslov, Mockler, T. C., Filichkin, S. A., Fox, S. E., Jaiswal, P., Makarova, K. S., Koonin, E. V., and Dolja, V. V., “Expression, splicing, and evolution of the myosin gene family in plants.”, Plant physiology, vol. 155, pp. 1191-204, 2011.

K. M. Lebold, Jump, D. B., Miller, G. W., Wright, C. L., Labut, E. M., Barton, C. L., Tanguay, R. L., and Traber, M. G., “Vitamin E deficiency decreases long-chain PUFA in zebrafish (Danio rerio).”, J Nutr, vol. 141, no. 12, pp. 2113-8, 2011.

N. B. Litherland, Bionaz, M., Wallace, R. L., Loor, J. J., and Drackley, J. K., “Effects of the peroxisome proliferator-activated receptor-alpha agonists clofibrate and fish oil on hepatic fatty acid metabolism in weaned dairy calves.”, J Dairy Sci, vol. 93, no. 6, pp. 2404-18, 2010.

D. E. Graugnard, Piantoni, P., Bionaz, M., Berger, L. L., Faulkner, D. B., and Loor, J. J., “Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus x Simmental cattle fed high-starch or low-starch diets.”, BMC Genomics, vol. 10, p. 142, 2009.

Y. Li, Ross-Viola, J. S., Shay, N. F., Moore, D. D., and Ricketts, M. - L., “Human CYP3A4 and murine Cyp3A11 are regulated by equol and genistein via the pregnane X receptor in a species-specific manner.”, J Nutr, vol. 139, no. 5, pp. 898-904, 2009.

B. J. Thering, Bionaz, M., and Loor, J. J., “Long-chain fatty acid effects on peroxisome proliferator-activated receptor-alpha-regulated genes in Madin-Darby bovine kidney cells: optimization of culture conditions using palmitate.”, J Dairy Sci, vol. 92, no. 5, pp. 2027-37, 2009.

A. K. G. Kadegowda, Bionaz, M., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Peroxisome proliferator-activated receptor-gamma activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents.”, J Dairy Sci, vol. 92, no. 9, pp. 4276-89, 2009.

M. Bionaz and Loor, J. J., “ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 are the most abundant isoforms in bovine mammary tissue and their expression is affected by stage of lactation.”, J Nutr, vol. 138, no. 6, pp. 1019-24, 2008.

F. Stormshak and Bishop, C., “Board-invited review: Estrogen and progesterone signaling: genomic and nongenomic actions in domestic ruminants.”, J Anim Sci, vol. 86, no. 2, pp. 299-315, 2008.

M. Bionaz, Baumrucker, C. R., Shirk, E., Heuvel, J. P. Vanden, Block, E., and Varga, G. A., “Characterization of Madin-Darby bovine kidney cell line for peroxisome proliferator-activated receptors: temporal response and sensitivity to fatty acids.”, J Dairy Sci, vol. 91, no. 7, pp. 2808-13, 2008.

C. Y. Usenko, Harper, S. L., and Tanguay, R. L., “Fullerene C60 exposure elicits an oxidative stress response in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 229, no. 1, pp. 44-55, 2008.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Akers, M., and Loor, J. J., “Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.”, J Nutr, vol. 138, no. 6, pp. 1158-64, 2008.